After reading a dicom file, I want to process the image with opencv. So I tried the followed code and errors occured in reader->GetOutput()->GetDimensions(dims);
and int* pixel = (int*)(imageCast->GetOutput()->GetScalarPointer(i, j, k));
How can I solve this?
#include <vtkSmartPointer.h>
#include <vtkImageViewer2.h>
#include <vtkImageCast.h>
#include <vtkDICOMImageReader.h>
#include <vtkRenderWindow.h>
#include <vtkRenderWindowInteractor.h>
#include <vtkRenderer.h>
#include <vtkAutoInit.h>
#include <opencv2/core.hpp>
#include <opencv2/highgui.hpp>
#include <opencv2/imgproc.hpp>
#include <typeinfo>
VTK_MODULE_INIT(vtkRenderingOpenGL2)
using namespace cv;
using namespace std;
void dicomread(string inputFilename, Mat& img, vtkSmartPointer<vtkDICOMImageReader>& reader);
int main(int argc, char* argv[])
{
std::string inputFilename = "C:\\Users\\26327\\Desktop\\dll4sw\\data\\SE3\\IM0.dcm";
Mat img;
// Read the DICOM file in the specified directory.
vtkSmartPointer<vtkDICOMImageReader> reader =
vtkSmartPointer<vtkDICOMImageReader>::New();
reader->SetFileName(inputFilename.c_str());
reader->Update();
dicomread(inputFilename, img, reader);
// Visualize
vtkSmartPointer<vtkImageViewer2> imageViewer =
vtkSmartPointer<vtkImageViewer2>::New();
imageViewer->SetInputConnection(reader->GetOutputPort());
vtkSmartPointer<vtkRenderWindowInteractor> renderWindowInteractor =
vtkSmartPointer<vtkRenderWindowInteractor>::New();
imageViewer->SetupInteractor(renderWindowInteractor);
imageViewer->Render();
imageViewer->GetRenderer()->ResetCamera();
imageViewer->Render();
renderWindowInteractor->Start();
return EXIT_SUCCESS;
}
void dicomread(string inputFilename, Mat& img, vtkSmartPointer<vtkDICOMImageReader>& reader)
{
img.create(512, 512, CV_32SC1);
vtkSmartPointer<vtkImageCast> imageCast =
vtkSmartPointer<vtkImageCast>::New();
reader->SetFileName(inputFilename.c_str());
reader->Update();
imageCast->SetInputConnection(reader->GetOutputPort());
imageCast->SetOutputScalarTypeToInt();
imageCast->Update();
int dims[3];
reader->GetOutput()->GetDimensions(dims);
for (int k = 0; k < dims[2]; k++)
{
for (int j = 0; j < dims[1]; j++)
{
for (int i = 0; i < dims[0]; i++)
{
int* pixel =
(int*)(imageCast->GetOutput()->GetScalarPointer(i, j, k));
img.at<int>(j, i) = int(*pixel);
}
}
}
}