I have built several generations of VTK with OSMesa for offscreen rendering on Linux servers, and several versions of VTK on MacOS for Cocoa from source over the years. I recently built VTK with the latest versions above on Linux successfully, and with Cocoa. However, my attempted duplicate and careful OSMesa/LLVM build on MacOS Catalina 10.15.7 with gcc@9 crashes. I was not allowed to upload the crash so it is below. I applied some of the suggested workarounds on this and other forums. I don’t know why it is even calling this library because I am writing PNG images but not reading any. I followed these instructions, the major difference being meson and ninja. https://www.paraview.org/Wiki/ParaView/ParaView_And_Mesa_3D. Thanks.
(base) iMac-Pro:ImplicitFunctions rspencer$ time ~/Projects/VTKgcc/vtkINSTALL/bin/vtkpython Alveoli.py
vtkpython(52511,0x10e5d1dc0) malloc: *** error for object 0x110b5a5e0: pointer being freed was not allocated
vtkpython(52511,0x10e5d1dc0) malloc: *** set a breakpoint in malloc_error_break to debug
Loguru caught a signal: SIGABRT
( 0.060s) [main thread ] :0 FATL| Signal: SIGABRT
Process: vtkpython [52511]
Path: /Users/USER/*/vtkpython
Identifier: vtkpython
Version: 0
Code Type: X86-64 (Native)
Parent Process: bash [1983]
Responsible: Terminal [1590]
User ID: 1823
Date/Time: 2022-05-22 19:22:56.105 -0400
OS Version: Mac OS X 10.15.7 (19H1824)
Report Version: 12
Bridge OS Version: 6.4 (19P4242)
Anonymous UUID: 42F69EF7-F61C-8EE4-F997-10F90756BB17
Time Awake Since Boot: 14000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 main thread Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
/Users/rspencer/Projects/VTKgcc/vtkINSTALL/lib/python3.9/site-packages/vtkmodules/…/…/…/libvtkDICOMParser-9.1.1.dylib
abort() called
vtkpython(52511,0x10e5d1dc0) malloc: *** error for object 0x110b5a5e0: pointer being freed was not allocated
Thread 0 Crashed:: main thread Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7349e32a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7355ae60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff73425808 abort + 120
3 libsystem_malloc.dylib 0x00007fff7351b50b malloc_vreport + 548
4 libsystem_malloc.dylib 0x00007fff7351e40f malloc_report + 151
5 libstdc++.6.dylib 0x000000010d7be6bd std::locale::_Impl::~_Impl() + 109
6 libstdc++.6.dylib 0x000000010d7be7e1 std::locale::operator=(std::locale const&) + 81
7 libstdc++.6.dylib 0x000000010d7bbf3c std::ios_base::_M_init() + 60
8 libstdc++.6.dylib 0x000000010d81bff1 std::basic_ios<char, std::char_traits >::init(std::basic_streambuf<char, std::char_traits >) + 17
9 libstdc++.6.dylib 0x00000001109b77c7 std::ios_base::Init::Init() (.part.0) + 663
10 libvtkDICOMParser-9.1.9.1.0.dylib 0x0000000110d26f50 _GLOBAL__sub_I_DICOMAppHelper.cxx + 16
11 dyld 0x000000010e521353 ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) + 535
12 dyld 0x000000010e52175e ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 40
13 dyld 0x000000010e51c17b ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 493
14 dyld 0x000000010e51c0e6 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const*, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 344
15 dyld 0x000000010e51c0e6 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const*, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 344
16 dyld 0x000000010e51a234 ImageLoader::processInitializers(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 188
17 dyld 0x000000010e51a2d4 ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) + 82
18 dyld 0x000000010e50bef2 dyld::runInitializers(ImageLoader*) + 82
19 dyld 0x000000010e51601b dlopen_internal + 609
20 libdyld.dylib 0x00007fff73341d8a dlopen + 171
21 libpython3.9.dylib 0x000000010cb91ca1 _imp_create_dynamic + 1553
22 libpython3.9.dylib 0x000000010ca84503 cfunction_vectorcall_FASTCALL + 99
23 libpython3.9.dylib 0x000000010cb552c2 _PyEval_EvalFrameDefault + 44690
24 libpython3.9.dylib 0x000000010cb48fcd _PyEval_EvalCode + 557
25 libpython3.9.dylib 0x000000010ca28f61 _PyFunction_Vectorcall + 433
26 libpython3.9.dylib 0x000000010cb5754c call_function + 172
27 libpython3.9.dylib 0x000000010cb5507d _PyEval_EvalFrameDefault + 44109
28 libpython3.9.dylib 0x000000010ca28ea8 _PyFunction_Vectorcall + 248
29 libpython3.9.dylib 0x000000010cb5754c call_function + 172
30 libpython3.9.dylib 0x000000010cb54fd7 _PyEval_EvalFrameDefault + 43943
31 libpython3.9.dylib 0x000000010ca28ea8 _PyFunction_Vectorcall + 248
32 libpython3.9.dylib 0x000000010cb5754c call_function + 172
33 libpython3.9.dylib 0x000000010cb550b3 _PyEval_EvalFrameDefault + 44163
34 libpython3.9.dylib 0x000000010ca28ea8 _PyFunction_Vectorcall + 248
35 libpython3.9.dylib 0x000000010cb5754c call_function + 172
36 libpython3.9.dylib 0x000000010cb550b3 _PyEval_EvalFrameDefault + 44163
37 libpython3.9.dylib 0x000000010ca28ea8 _PyFunction_Vectorcall + 248
38 libpython3.9.dylib 0x000000010cb5754c call_function + 172
39 libpython3.9.dylib 0x000000010cb550b3 _PyEval_EvalFrameDefault + 44163
40 libpython3.9.dylib 0x000000010ca28ea8 _PyFunction_Vectorcall + 248
41 libpython3.9.dylib 0x000000010ca2a68a object_vacall + 474
42 libpython3.9.dylib 0x000000010ca2a92d _PyObject_CallMethodIdObjArgs + 253
43 libpython3.9.dylib 0x000000010cb8c7e1 PyImport_ImportModuleLevelObject + 1217
44 libpython3.9.dylib 0x000000010cb52924 _PyEval_EvalFrameDefault + 34036
45 libpython3.9.dylib 0x000000010cb48fcd _PyEval_EvalCode + 557
46 libpython3.9.dylib 0x000000010cbb7e01 pyrun_file + 321
47 libpython3.9.dylib 0x000000010cbb765a pyrun_simple_file + 394
48 libpython3.9.dylib 0x000000010cbb747d PyRun_SimpleFileExFlags + 109
49 libpython3.9.dylib 0x000000010cbdf389 pymain_run_file + 329
50 libpython3.9.dylib 0x000000010cbde92b pymain_run_python + 443
51 libpython3.9.dylib 0x000000010cbde715 Py_RunMain + 37
52 libpython3.9.dylib 0x000000010cbdfdc1 pymain_main + 49
53 libpython3.9.dylib 0x000000010cbdfd68 Py_Main + 56
54 libvtkPythonInterpreter-9.1.9.1.0.dylib 0x000000010c9299bb vtkPythonInterpreter::PyMain(int, char**) + 491 (vtkPythonInterpreter.cxx:555)
55 vtkpython 0x000000010c90dc9b main + 139 (basic_string.h:226)
56 libdyld.dylib 0x00007fff73356cc9 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010e5d1dc0 rcx: 0x00007ffee32f2618 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffee32f2640 rsp: 0x00007ffee32f2618
r8: 0x0000000000000000 r9: 0x0000000000000000 r10: 0x000000010e5d1dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000050 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff7349e32a rfl: 0x0000000000000246 cr2: 0x000000010e656220
Logical CPU: 0
Error Code: 0x020000b8
Trap Number: 133
Binary Images:
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0x7fff73555000 - 0x7fff7355ffff libsystem_pthread.dylib (416.100.3) <62CB1A98-0B8F-31E7-A02B-A1139927F61D> /usr/lib/system/libsystem_pthread.dylib
0x7fff73560000 - 0x7fff73564ff3 libsystem_sandbox.dylib (1217.141.8) <9BE68E25-D41B-30DD-A1F9-35506143DB2A> /usr/lib/system/libsystem_sandbox.dylib
0x7fff73565000 - 0x7fff73567fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff73568000 - 0x7fff7356fffb libsystem_symptoms.dylib (1238.120.2) <702D0910-5C34-3D43-9631-8BD215DE4FE1> /usr/lib/system/libsystem_symptoms.dylib
0x7fff73570000 - 0x7fff73586ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff73588000 - 0x7fff7358dff7 libunwind.dylib (35.4) <42B7B509-BAFE-365B-893A-72414C92F5BF> /usr/lib/system/libunwind.dylib
0x7fff7358e000 - 0x7fff735c3ffe libxpc.dylib (1738.140.3) <8DA7D88F-AE2F-3BCF-8426-8D041E57A9AA> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 9122
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=461.1M resident=0K(0%) swapped_out_or_unallocated=461.1M(100%)
Writable regions: Total=293.0M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=293.0M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 256K 1
Kernel Alloc Once 8K 1
MALLOC 44.1M 15
MALLOC guard page 24K 5
MALLOC_MEDIUM (reserved) 240.0M 2 reserved VM address space (unallocated)
STACK GUARD 56.0M 1
Stack 8192K 1
VM_ALLOCATE 4K 1
__DATA 4635K 88
__DATA_CONST 1208K 32
__LINKEDIT 412.6M 61
__OBJC_RO 32.3M 1
__OBJC_RW 1860K 2
__TEXT 48.7M 82
__UNICODE 564K 1
shared memory 12K 3
=========== ======= =======
TOTAL 850.1M 297
TOTAL, minus reserved VM space 610.1M 297